PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof009789
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family AP2
Protein Properties Length: 261aa    MW: 28198.9 Da    PI: 6.6263
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-115364PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.96e-14959155
        AP2  1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
               s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ +++g
  Sof009789  9 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 59
               89********.7******...5...334336**********99**********99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-17968IPR016177DNA-binding domain
PfamPF008471.4E-9959IPR001471AP2/ERF domain
CDDcd000181.63E-26969No hitNo description
Gene3DG3DSA:3.30.730.101.8E-161068IPR001471AP2/ERF domain
SMARTSM003801.2E-321073IPR001471AP2/ERF domain
PROSITE profilePS5103216.0811067IPR001471AP2/ERF domain
PRINTSPR003676.1E-71122IPR001471AP2/ERF domain
PRINTSPR003676.1E-74969IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
XTGFARGSSK YRGVTLHKCG RWEARMGQLL GKKYIYLGLF DSEIEAARAY DRAAIRFNGP  60
DAVTNFDSSS YDGDVPLPPA IEKDVVDGDI LDLNLRISQP NVHDLKSDGT LTGFGLGCNS  120
PKASSSIVSQ PISPQWPVHP HSTLMQPQHQ HLYASPCPGF FVNLREAPME EKRAEPAGPH  180
PQPAFPAWTW QMQGSPAPFL PATAASSGFS TATGVDAATA AGSVPSGGPR QLFFRYQQLR  240
FPPPPDRLPS PSVELESGDX X
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.33200.0inflorescence| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459580.11e-148hypothetical protein SORBIDRAFT_02g007000
TrEMBLC5XDI61e-148C5XDI6_SORBI; Putative uncharacterized protein Sb02g007000
STRINGSb02g007000.11e-148(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.39e-41related to AP2.7